Constructor Detail

• MixedSetHandler()

Method Detail

• @java.lang.Override
  protected java.util.List<java.lang.String> getSequenceByEntities(java.util.Map config)

  Get sequential_dimension entity from config

  Parameters:

  config - Mixed set configuration

  Returns:

  Entity name to sequence by

• @java.lang.Override
  protected java.util.Map getSetConfig(java.util.Map suffixConfig)

• @java.lang.Override
  protected java.util.Map getSetIndex(nfneuro.plugin.model.BidsFile file, java.util.Map setConfig, java.lang.String configKey)

• @java.lang.Override
  protected void packFileIntoSet(java.util.Map sets, java.util.Map allFiles, java.util.Map index, nfneuro.plugin.model.BidsFile file, java.util.Map ordering)

• @java.lang.Override
  protected java.util.List<nfneuro.plugin.model.BidsChannelData> processGroup(java.lang.String datasetRoot, java.util.Map sets, java.util.Map allFiles, java.util.Map config, java.util.List<java.lang.String> loopOverEntities, java.util.Map<java.lang.String, java.util.Map<java.lang.String, java.lang.String>> suffixMapping)

  Process a group for mixed set configuration Handles nested named groups (via pattern matching) containing sequential arrays

  reference:

  Mixed set processing: https://github.com/agahkarakuzu/bids2nf/blob/main/subworkflows/emit_mixed_sets.nf#L56-L70

  Parameters:

  filesInGroup - Files in this grouping key group

  config - Configuration map

  loopOverEntities - Entities to group by

  suffixMapping - Suffix to config key mapping

  Returns:

  BidsChannelData or null

• @java.lang.Override
  protected java.lang.String setName()