reconst_meandiffusivitypriors
Compute the mean of the diffusivity priors (iso_diff, para_diff & perp_diff). This is most often used following the computation of diffusivity priors using the reconst/diffusivitypriors module.
Keywords : diffusivity, axial, isotropic, radial
Inputs
Section titled “Inputs”Input 1
Section titled “Input 1”Format : val(para_diff_list)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| para_diff_list | list | List of text files containing parallel diffusivity values. | True | *.txt |
Input 2
Section titled “Input 2”Format : val(iso_diff_list)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| iso_diff_list | list | List of text files containing isotropic diffusivity values. | True | *.txt |
Input 3
Section titled “Input 3”Format : val(perp_diff_list)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| perp_diff_list | list | List of text files containing perpendicular diffusivity values. | True | *.txt |
Outputs
Section titled “Outputs”mean_para_diff_file
Section titled “mean_para_diff_file”Format : path(mean_para_diff.txt)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| mean_para_diff.txt | file | Text file for average parallel diffusivity value. | True | mean_para_diff.txt |
mean_iso_diff_file
Section titled “mean_iso_diff_file”Format : path(mean_iso_diff.txt)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| mean_iso_diff.txt | file | Text file for average isotropic diffusivity value. | True | mean_iso_diff.txt |
mean_perp_diff_file
Section titled “mean_perp_diff_file”Format : path(mean_perp_diff.txt)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| mean_perp_diff.txt | file | Text file for average perpendicular diffusivity value. | True | mean_perp_diff.txt |
mean_para_diff
Section titled “mean_para_diff”Format : val(mean_para_diff)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| mean_para_diff | string | String containing the average parallel diffusivity value. | True |
std_para_diff
Section titled “std_para_diff”Format : val(std_para_diff)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| std_para_diff | string | String containing the std of the parallel diffusivity values. | True |
min_para_diff
Section titled “min_para_diff”Format : val(min_para_diff)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| min_para_diff | string | String containing the minimum parallel diffusivity value. | True |
max_para_diff
Section titled “max_para_diff”Format : val(max_para_diff)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| max_para_diff | string | String containing the maximum parallel diffusivity value. | True |
mean_iso_diff
Section titled “mean_iso_diff”Format : val(mean_iso_diff)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| mean_iso_diff | string | String containing the average isotropic diffusivity value. | True |
std_iso_diff
Section titled “std_iso_diff”Format : val(std_iso_diff)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| std_iso_diff | string | String containing the std of the isotropic diffusivity values. | True |
min_iso_diff
Section titled “min_iso_diff”Format : val(min_iso_diff)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| min_iso_diff | string | String containing the minimum isotropic diffusivity value. | True |
max_iso_diff
Section titled “max_iso_diff”Format : val(max_iso_diff)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| max_iso_diff | string | String containing the maximum isotropic diffusivity value. | True |
mean_perp_diff
Section titled “mean_perp_diff”Format : val(mean_perp_diff)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| mean_perp_diff | string | String containing the average perpendicular diffusivity value. | True |
std_perp_diff
Section titled “std_perp_diff”Format : val(std_perp_diff)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| std_perp_diff | string | String containing the std of the perpendicular diffusivity values. | True |
min_perp_diff
Section titled “min_perp_diff”Format : val(min_perp_diff)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| min_perp_diff | string | String containing the minimum perpendicular diffusivity value. | True |
max_perp_diff
Section titled “max_perp_diff”Format : val(max_perp_diff)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| max_perp_diff | string | String containing the maximum perpendicular diffusivity value. | True |
versions
Section titled “versions”Format : path(versions.yml)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| versions.yml | file | File containing software versions | True | versions.yml |
| Description | DOI | |
|---|---|---|
| scilpy | The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox. |
Authors
Section titled “Authors”Last updated : 2025-12-22